Comments - Hibernate Reverse Engineering wizard with MariaDB
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Just to update this.
I gave up trying to make the reverse engineering work.
There was already an ORM in place (Toplink). So, I used some of the files generated by Toplink which capture the mapping in XML. I used this to generate the Java code for Hibernate with JPA. It works nicely. I don't have a big risk of needing to change the database - it's a legacy app that's very stable.