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This worked with Centrify using this configuration for /etc/pam.d/mysql:
auth include system-auth
account required pam_nologin.so
account include system-auth
password include system-auth
session optional pam_keyinit.so force revoke
session include system-auth
session required pam_loginuid.so
Thanks to http://forums.mysql.com/read.php?30,604795,606085#msg-606085 for the solution
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