Comments - MONyog Auto-Discovery of MariaDB Databases
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No, it is not possible to register the servers running on different ports on a particular machine automatically in Monyog. Monyog requires you to manually register the servers running on different ports individually.
You can also register the servers in Monyog using API. You can refer the documentation regarding registering the server through API, here >> http://monyogkb.webyog.com/category/485-the-monyog-api