Comments - Replication stops after one hour or so
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Oh deary me, where can i hide my face?! You were right about the tables. We have one without a primary key and about 390000 records (created a long time before i joined the company).
Furthermore the DELETE statement is encapsulated in a transaction, so the Execution-Pointer really stops for an extensive time. I was able to find the problem by looking into the binlogs with "mysqlbinlog". Very useful tool. Thank you for pointing me in the right direction!